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273 Open
299 Closed
245 Open Issues
245 Open issues
53 Closed Issues
298 Open & Closed Issues
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F: Computational neuroscience
F: Data Analysis
F: Neuroimaging
F: Utilities
good first issue
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F34 Beta freeze 2021-02-23
F30 beta
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CNS2019
F31 GA 2019-10-29
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#475
Package: Whitlock-Group/TRACER: A toolkit to register and visualize anatomical coordinates in the rat brain
1
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
F: Utilities
S: Needs packaging
T: Software
Normal
#473
Package spikeinterface: module for creating flexible and robust spike sorting pipelines.
6
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#471
Package dandischema
1
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
D: Easy
good first issue
Normal
#470
Package lukelbd/proplot: 🎨 A powerful matplotlib wrapper for making beautiful, publication-quality graphics
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Easy
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#469
Package Klusters/Neuroscope/NDManager: Free Data Visualization and Processing Tools for Neurophysiologists
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
F: Utilities
S: Needs packaging
T: Software
Normal
#466
Package python-mearec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays.
3
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#463
Package VND: neuronal visualization program
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Hard
S: Needs packaging
F: Utilities
T: Software
S: RPM Fusion
Normal
#462
Package BlueBrain/NeuroR: A collection of tools to repair morphologies
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#459
Package PBLab/neural_collision_detection: Collide vasculature and neurons for fun and profit
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#458
Package R-catch22: R package for calculation of 22 CAnonical Time-series CHaracteristics
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Easy
F: Data Analysis
S: Needs packaging
T: Software
Normal
#457
Package rgobi
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
T: Software
S: Needs packaging
Normal
#456
Package ggobi
1
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
F: Data Analysis
S: Needs packaging
T: Software
D: Normal
Normal
#454
Package facebookresearch/nevergrad: A Python toolbox for performing gradient-free optimization
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#453
Package EDEN: fully NeuroML compliant simulator
1
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#450
Package psyneulink: A block modeling system for cognitive neuroscience
3
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#449
Package MIIND
2
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#448
Package denisecailab/minian: miniscope analysis pipeline with interactive visualizations
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#445
Package bluepysnap
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#443
Package dandi: Command line client for interaction with DANDI archive elements
1
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Easy
F: Data Analysis
F: Neuroimaging
F: Utilities
S: Needs packaging
T: Software
Normal
#439
Package BlueBrain/morph-tool: A toolbox for morphology editing. It aims to provide small helper programs that perform simple tasks.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#437
Package FlyBrainLab/Neuroballad
1
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
F: Utilities
S: Needs packaging
T: Software
Normal
#436
Package FlyBrainLab/NeuroMynerva
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Hard
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#435
Package FlyBrainLab/FBLClient: FBLClient is a Python package that implements an API for accessing and manipulating the Fruit Fly Brain Observatory (FFBO) Project, built for the FlyBrainLab initiative.
1
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Easy
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
S: Requested
S: On hold
Normal
#434
Package FlyBrainLab components
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
T: Software
S: Needs packaging
Normal
#433
Package iqr: simulator for large scale neural systems
1
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
T: Software
S: Needs packaging
S: Requested
Normal
#416
Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#407
Package spinalcordtoolbox: software dedicated to the processing and analysis of spinal cord MRI data.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#406
Package brainets/frites: Framework for Information Theoretical analysis of Electrophysiological data and Statistics
4
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
T: Software
S: Needs packaging
F: Data Analysis
D: Easy
good first issue
Normal
#404
Package PyOIF: Computational tool for modelling of multi-cell flows in complex geometries
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Hard
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#398
Package NeurodataWithoutBorders/nwb-jupyter-widgets: Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
F: Data Analysis
F: Utilities
good first issue
S: Needs packaging
T: Software
D: Normal
Normal
#397
Package holoviews: Stop plotting your data - annotate your data and let it visualize itself.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#396
Package pypesto: Parameter EStimation TOolbox for python
4
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Easy
F: Computational neuroscience
F: Utilities
good first issue
T: Software
S: Needs packaging
Normal
#394
Package alejoe91/MEArec: Fast and customizable of extracellular recordings on MEA
1
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Easy
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
good first issue
Normal
#387
Package BlueBrain/CoreNeuron: Simulator optimized for large scale neural network simulations.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
T: Software
S: Needs packaging
Normal
#386
Package gallantlab/pycortex: Pycortex is a python-based toolkit for surface visualization of fMRI data
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Easy
F: Neuroimaging
F: Utilities
good first issue
S: Needs packaging
S: Needs documentation
T: Software
Normal
#383
Package JASP: Graphical Statistical Software for Common Statistical Designs
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
good first issue
S: Needs packaging
S: Needs documentation
T: Software
Normal
#382
Package BlueBrain/nmodl: Code Generation Framework For NEURON MODeling Language (python)
1
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
F: Computational neuroscience
S: Needs packaging
T: Software
D: Hard
Normal
#379
Package Pycabnn: Efficient and Extensible Software to Construct an Anatomical Basis for a Physiologically Realistic Neural Network Model
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Easy
F: Computational neuroscience
S: Needs packaging
T: Software
good first issue
Normal
#378
Package SpikeInterface/spikely: A GUI for running popular spike sorting algorithms on extracellular data of any file format.
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
S: Needs packaging
T: Software
Normal
#376
Package brian2tools
3
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
T: Software
S: Needs packaging
F: Computational neuroscience
F: Utilities
F: Data Analysis
D: Normal
Normal
#375
Package Bioconductor - bigPint
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#373
Package GHFC/HyPyP: The Hyperscanning Python Pipeline
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
good first issue
Normal
#371
Package numba
8
Opened
3 years ago
by
ankursinha
. Modified
a year ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
S: Waiting on upstream
Normal
#370
Package nwb-explorer
1
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
T: Software
S: Needs packaging
Normal
#367
Package adamreeve/npTDMS: NumPy based Python module for reading TDMS files produced by LabView
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#362
Package AllenInstitute/AllenSDK: code for reading and processing Allen Institute for Brain Science data
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#360
Package mopet
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#359
Package cellfinder: Automated 3D cell detection and registration of whole-brain images
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
F: Utilities
S: Needs packaging
T: Software
Normal
#358
Package betterbib: Update BibTeX files with info from online resources.
7
Opened
4 years ago
by
ankursinha
. Modified
2 years ago
D: Easy
good first issue
S: Needs packaging
T: Software
F: Utilities
Normal
#352
Package phy: interactive visualization and manual spike sorting of large-scale ephys data
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal